THE LACK OF A CENTRALIZED AND UNIVERSAL TOOL FOR INPUT FILE GENERATION FOR MOLECULAR DYNAMICS SIMULATIONS AND THE DEVELOPMENT OF SUCH A TOOL

The Lack of a Centralized and Universal Tool for Input File Generation for Molecular Dynamics Simulations and the Development of such a Tool

This study aims to design and develop a tool that can efficiently generate Molecular Dynamics (MD) simulation input files and systems for various simulation software such as NAMD, Amber and GROMACS collectively using a single platform.Molecular Dynamics simulation is performed in order to understand the structure, dynamics and thermodynamic behavio

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